So that I can direct this post could you tell me if this is for NT7 or NT8? It looks like this thread is from 2010 so I wanted to make sure we get you the correct information. I would suggest in the future to just create a new thread instead of posting on very old threads.
The output window in either platform cannot be modified in the way you are asking, the output is placed at the bottom line and scrolls up. You could make a custom window in NT8 which does what you are asking but that would only contain the specific output you send to it and not normal output from NinjaScript.
I look forward to being of further assistance.
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