This is expected in the strategy analyzer and the ability to plot in separate panels is being tracked as a feature request I will add your vote to.
More information,
The strategy analyzer chart in NinjaTrader 8 is a feature limited chart, which you can see by right-clicking on an indicator in the chart and selecting properties. This is an intentional change from NinjaTrader 7. Users who want more control over how Indicators are displayed will want to run their strategies with the Playback connection.
Please let us know if you need further assistance.
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